Skip to content

Summer update and an article for the Times

It has been nearly four months since I’ve posted to The Cancer Chronicles, and during that time I’ve completed a pretty solid draft of six chapters — approximately a third to a half of the book. I also traveled to Cambridge, England, for a seminar on Science and Islam, and then to London, where I interviewed two researchers at Imperial College. One of them, Jeremy Nicholson, is working at the forefront of the effort to understand the microbiome and how it is involved in cancer. It’s an astonishing thought: that the cells that make up our tissues and organs can exchange molecular signals with the unicellular microbes that inhabit us. It is commonly said that 90 percent of the cells in our body are, in fact, microbial — we’re outnumbered 10 to 1. Even more striking, Dr. Nicholson estimated that more than 99 percent of the working genes in the human body are within this horde of tiny creatures. With signals flying back and forth between the two domains, the implications for cancer and other diseases are just beginning to be unraveled. I’ve described a little about this work and other cutting edge cancer research in an article for Science Times: Cancer’s Secrets Come Into Sharper Focus.

As I get deeper into the manuscript and closer to publication — still probably two years away — I expect to increase the pace of these dispatches. Meanwhile I thank you for occasionally tuning in.

George Johnson
talaya.net

Share

Cell phones and cancer

Readers of my other online endeavor, The Santa Fe Review, know that one of my frequent interests has been a psychiatric condition in which otherwise intelligent people become fixated on the idea that cell phones cause brain tumors. I also wrote about the phenomenon last year for Slate (please see On Top of Microwave Mountain) and described my experiments with a microwave meter to John Horgan on Bloggingheads.tv.

A disproportionate number of electro worriers seem to live in Santa Fe where they write letters to the editor of the New Mexican speaking with mock authority of hundreds — even thousands — of studies supposedly linking cell phones with cancer and other neurological disorders. A couple of them proudly point to their credentials as holistic medical practitioners, which gives them no more expertise on the subject than on Egyptian archaeology or the effect of gamma rays on Man in the Moon marigolds. In the Electromania Archives you can find pointers to a large body of genuine, peer-reviewed research, concurring that it is extremely unlikely that the feeble emissions from cellphones are carcinogenic. These are dismissed by the true believers as part of a secret coverup.

Measuring microwaves on Sandia Crest in New Mexico

In last Sunday’s New York Times Magazine, Siddhartha Mukherjee, an oncologist and author of an excellent new book about cancer, The Emperor of All Maladies, has written the best overview I have read on the issue. Or rather nonissue. Among thousands of presentations at the international cancer research meeting I described in my previous post, there was precisely one that touched on the subject, a poster entitled Low-dose radiation exposure and the risk of developing acoustic neuroma. For cell phones it was zero.

As someone who considers cell phones a social abomination (private, nonlocal conversations should take place inside booths) and whose annual cell phone bill is way less than $100, I perversely wish that the devices would be found dangereous. For that to happen new laws of physics would have to be discovered or a new understanding of the fundamentals of cancer. Either way it would be a scientific breakthrough of the first magnitude and something fascinating to write about. Cold fusion seemed like that for awhile.

George Johnson
talaya.net

Share

Total immersion

Orlando

Last week some 18,000 scientists from around the world descended on Orlando, Florida for the annual meeting of the American Association for Cancer Research. Though the venue left much to be desired — the Orlando convention center and hotel complex is like a really boring version of Las Vegas — the conference was a godsend for an outsider like me, who is trying to fathom this sprawling field. For five days I moved from session to session, filling a thick notebook. I began typing up my notes on the flight back to New Mexico — what probably amounts to 10,000 words.

Some of the talks were, for me, barely comprehensible. As I furiously jotted I would add marginalia — notes to myself about concepts that flabbergasted or confused me. Sometimes I would feel the satisfying click of two scraps of information coming together to form an idea and ideas joining into a realization. Surrounded by laptops and iPads, I felt like the last of the old-fashioned note takers. But I think there is something to be said for my method. By the time I have listened to a lecture and typed up my scribbling — annotating it with background information pulled from the web — the message is engrained more deeply in my brain.

This morning on bloggingheads.tv, I talk about the meeting with my colleague John Horgan. We also discuss an essay I wrote recently for the New York Times on radiation fear. (Please note that during the final segment of our dialogue I misspeak, saying “radon miners” when of course I meant uranium miners. Colorless gases are difficult to remove with shovels.) Meanwhile I am formulating several more pieces for the Times on the science of cancer — an intellectual problem so fascinating that sometimes one forgets for a moment the suffering involved.

George Johnson
talaya.net

Share

Inside the Black Box

I had the good feeling this week of getting over a hump: I have four chapters solidly drafted and the beginning of a fifth. That’s approaching about 20,000 words, perhaps a quarter of a book. Before I surrender the manuscript I will have gone through each of those chapters maybe a hundred more times, tweaking sentences, double and triple-checking facts, tearing apart paragraphs and pages that suddenly don’t seem so solid after all.  A chapter that has gotten too big might split mitotically into two chapters, which each in itself will start to grow. In a kind of violation of the arrow of time, seeds will be planted retrospectively in early chapters — foreshadowing ideas already written into later parts of the book. Sometimes I think of them as chords partially plucked, later to be resolved. A little grandiose maybe for what is at best prestidigitation.

I tried to describe the process in the prologue to an earlier book, in which I decided to let some of the seams show:

Like any kind of writing, science writing involves spinning an illusion. All the hard intellectual work — digging through the piles of papers and reference books, reading the same paragraph a dozen times before firing off yet another emailed plea for clarification — all this takes place behind a curtain, carefully hidden from view. What ultimately emerges, Oz-like, is a narrator who speaks with the resounding, omniscient voice of authority, a being seemingly born with encyclopedic knowledge instantly retrieved and dispensed. And that, of course, is a fiction. A friend who was reading one of my books once asked, “Do you actually know all those things you put in there, or do you have to look them up?” She was relieved to hear that what seemed a smooth flow of erudition was haltingly cobbled together after multiple trips to the library.  “But isn’t that cheating?” she said. I think she was kidding, but sometimes I feel that way. I leaf through the index of a book I’ve written and marvel, “What in the world did I have to say about Plotinus or Aristotle?”

This time I have tried not to cheat. In the pages that follow, the surface has been left somewhat translucent offering dim glimpses of the man behind the curtain fumbling at the controls — straining to grasp an idea with an imprecise metaphor, only to discard it for another with a tighter fit, closing in on an airy notion from several directions, triangulating on approximate truth.

I’ve also tried to resist the temptation to say too much. Fascinating as they are, many of the more tangential details will remain wrapped inside their boxes. We are operating here on a need to know basis. (Those who want to look deeper can refer to my annotations at the end of the book, called “The Fine Print,” a section that can also be taken as a gloss on the nature and limitations of science writing.)

More than ever, I want the reader to feel that we are both on the same side — outsiders seeking a foothold on the slippery granite face of a new idea.

My guiding light has been a statement by the writer Alan Lightman about what makes a good essay. I think it applies as well to a good nonfiction book:

“For me, the ideal essay is not an assignment, to be dispatched efficiently and intelligently, but an exploration, a questioning, an introspection. I want to see a piece of the essayist. I want to see a mind at work, imagining, spinning, struggling to understand.”

A Shortcut Through Time

Here is the whole prologue: Inside the Black Box.

George Johnson
talaya.net

Share

Ancient mortality and cancer

Last night I was up until 2 a.m. working on my third chapter. This morning I finally cleared the decks enough to dig into the problem posed in my previous post about ancient life spans and cancer:

If an abundance of infant deaths, through accident or infanticide, dragged down the average life span, then a significant number of people who survived childbirth might have lived well past 50. If so that would cast some doubt on the assertion that old age is the predominant reason there is more cancer today.

The skull of an ancient Egyptian woman whose face was eaten off by cancer. From Eugen Strouhal, “Ancient Egyptian Case of Carcinoma”

That raises the bigger question of how mortality rates are estimated for the centuries before census records were kept. It turns out that whole books have been written on the subject, paleodemography, in which the age of old skeletons is gauged by their physical appearance. That data is then fed into a statistical model. A very good paper on this is W. J. MacLennan and W. I. Sellers, “Aging Through the Ages,” Proceedings of the Royal College of Physicians Edinburgh (1999) vol. 29, pp. 71-75. It is clear from the paper that child skeletons are included in the count, so it seems that the mathematical analyses would have to allow for that. (I’ve sent out a couple of queries to clarify the point.) I also wonder how often the bodies of infants (especially those murdered by their parents) were buried in cemeteries, allowing them into the calculations.

MacLennan and Sellers cite another paper, “Length of Life in the Ancient World: a Controlled Study,” in which J.D. Montague of Charing Cross Hospital estimated the median age of death (not the mean) for a sample of Greek and Roman men born before 100 B.C. He excluded not only those who died during childhood but also from acts of violence. “A study of these survivors would supply more information about genetic and constitutional influences on health than the mortality of the total population,” he wrote. “A murdered man has nothing to say on this score.”

I was startled by his conclusion: these survivors typically lived to about age 70. But his methodology seems questionable: his study was based on 298 people prominent enough to be included in the Oxford Classical Dictionary.

More still to sort out.

George Johnson
talaya.net

Share

How long we used to live

You see this figure a lot when you start reading about cancer: About 78% of all malignant disease is diagnosed in people 55 years or older. (American Cancer Society. Cancer Facts & Figures 2010) For that reason alone one would expect to find fewer cases in earlier centuries, a point I made in my recent Times story. By examining skeletons from the days of the Neanderthals through the year zero (when B.C. became A.D.) anthropologists have calculated that the mean lifespan was 30 years with a maximum of about 45. I read that in an interesting new book, How It Ends: From You to the Universe by Chris Impey, a professor of astronomy at the University of Arizona. (The book is not only about human longevity but also the longevity of the universe, a dizzying sweep across subjects. So far I’m up to page 50.)

Life Expectancy at Birth, 1900 to 2050. Department of Commerce, Bureau of the Census.

The same low life expectancy continued through the Renaissance, Dr. Impe writes, except for royalty who could expect to live until 50. (Reading that brought to mind the autopsy of the mummy of Ferrante I of Aragon, the 15th century King of Naples, who died at 63 apparently from metastatic colon cancer.) It has been only in the last two centuries that lifespan has been increasing. By 1900 the rest of us (at least in the developed world) had caught up with Renaissance kings and queens: Children born in 1900 could expect to die at 50. For those born in 2000 life expectancy is 80.

All that was mostly familiar but Dr. Impey surprised me with this observation: almost all of the gain in lifespan came from a reduction in childhood mortality. “In other words it’s a myth,” he wrote, “that our ancestors endured lives that English philosopher Thomas Hobbes had labeled ‘nasty, brutish, and short.’”

Now I’m not sure what to think. If an abundance of infant deaths, through accident or infanticide, dragged down the average life span, then a significant number of people who survived childbirth might have lived well past 50. If so that would cast some doubt on the assertion that old age is the predominant reason there is more cancer today. What we need to know is the median, not the mean. More things I need to sort out.

I have been grappling all week with the issue of longevity as I try to finish a draft of my third chapter, which concentrates on ancient cancer. Archaeologists of the future exhuming a 21st century graveyard will surely find more cancer than in, say, a medieval crypt. But some scholars like Luigi L. Capasso, an Italian anthropologist, have argued that the discrepancy cannot be explained entirely by our living longer. He points to “the very strange fact that an increase in cancer prevalence has also been noted in countries in which life expectancy was minimal in the past century.” (Capasso, L. L. (2005), Antiquity of Cancer. International Journal of Cancer, 113: 2–13). I just read in the CIA World Fact Book that life expectancy at birth ranges from 38.48 (so precise!) in Angola to 89.78 in Monaco.

But isn’t there an easy rebuttal to Dr. Capasso’s argument? These countries would also be the ones with poorer nutrition, higher rates of chronic infection, and rising tobacco use. More people in the third world, mostly children, die from diarrhea than people die from cancer in the developed world. (That is also from the Impe book.) In poor countries now undergoing rapid development there will be increased urbanization, with more chances of spreading human papilloma virus and hepatitis, which are associated with cervical and liver cancers. If medical care in these countries is improving (from abysmal to mediocre) more cancer might be detected and better records kept. Some of the rise would be an illusion. As the country grows more prosperous people will be slowly adopting the lifestyles of the industrialized world, gaining weight (obesity is strongly linked with cancer incidence) and longer lifespans.

Dr. Capasso’s implication is that there is more cancer today because of industrial carcinogens. So many friends I talk to take that for granted. Until recently I would have too. But the deeper I dig, the less evidence there seems to be. It is all so much more complicated.

George Johnson
talaya.net

Share

What is in a name

It is never easy naming things. I usually don’t settle on a title for a book until I’m deep into the manuscript . (I don’t have the foggiest idea what my new book will be called.) “The Cancer Chronicles” may just be a placeholder for this journal until I think of something better. Or maybe the name will stick. It seems like an obvious choice — so obvious that it has been used before: for a series in the Philadelphia Inquirer that ended in 1996 with the death of its author, Fawn Vrazo, and by a newsletter published until 1997 by Ralph W. Moss, a champion of alternative therapies. The domain name cancerchronicles.com is parked unused at a web hosting company called Bluehost by someone who also owns something called loveyourpresident.com, which hasn’t been updated for a year and a half.

The biological phenomenon called cancer was named by Hippocrates from the Greek word karkinos or “crab.” Six hundred years later Galen explained why: “As a crab is furnished with claws on both sides of its body, so, in this disease, the veins which extend from the tumor represent with it a figure much like that of a crab.”

Most tumors don’t actually look like that, and recently I came across another etymological theory. A parasite, Sacculina carcini, feasts on crabs in a manner eerily similar to the feasting of a cancerous tumor. I’ll save the details for my book. But this is the gist: Maybe the ancient Greeks, dining on one of their favorite delicacies, noticed the similarities between the way Sacculina carcini overtakes its host and the way a cancer metastasizes.

George Johnson
talaya.net

Share

How many people ever lived?

Medieval skeleton with cancerous lesions

When I began reading about paleo-oncology last summer, I came across an estimate by the Czech anthropologist Eugen Strouhal of how many cases of suspected cancer had been found in ancient European skeletons: 176. The number, from a paper published in 1996 in the International Journal of Paleopathology, didn’t include Egyptian mummies or cases from other continents. And by the time I was writing the Times story referred to in my previous post, I had found about 20 more recent discoveries. Adding all of these reports together, I felt safe in concluding that about 200 cases of ancient and prehistoric cancer have been found by archaeologists.

That doesn’t sound like a lot, and some scholars like Luigi Capasso, an Italian anthropologist, have argued that cancer was extremely rare before the environmental assaults that came with industrialization. Others, like Dr. Strouhal, have suggested that the few cases researchers have stumbled across might be the tip of an iceberg — that there is a core rate of cancer that has remained fairly steady since prehistoric times.

The issue can quickly become political, and I was looking for some perspective. Of all the people who lived and died in millennia past, how many can paleo-oncologists possibly have examined? I was surprised to learn that by 1 A.D. the cumulative population of the earth was already approaching 47 billion and had nearly doubled by 1750. (The estimate, obviously very rough, is from a study by Carl Haub of the Population Reference Bureau.) So much for the notion that more people are alive today than have ever walked the earth. Not even close.

The next number I needed was one that, as far as I can see, had not been published before: the total number of human skeletons that have been dug up by archaeologists and made available for scientific study. Two experts I asked arrived independently at the same approximation: About 100,000. That would make the sample size only about 1/10,000th of 1 percent. For palaeo-oncologists it is even smaller than that: only a portion of those skeletons has been systematically examined for bone cancer. That is not much to hang an argument on, and I am left in the same quandary. Is cancer a natural (though unwanted) biological phenomenon, or a Frankensteinian creation of modern times?

George Johnson
talaya.net

Share

Paleo-oncology

From A. Sefcakova, et. al., "Case of Metastatic Carcinoma From End of the 8th to Early 9th Century Slovakia"

On the Tuesday between Christmas and New Years, my story Unearthing Prehistoric Tumors was published on the cover of Science Times, the weekly science section of the New York Times. The subject was the antiquity of cancer, which has probably existed since the first multicellular creatures slithered on earth. (The picture on the right is an x-ray image of vertebrae from a medieval human skeleton marked with signs of metastatic carcinoma, a cancer that arises in the soft tissues of the body and migrates to bone.)

“Cancer is an inevitability the moment you create complex multicellular organisms and give the individual cells the license to proliferate,” Bob Weinberg, a prominent cancer researcher, told me when I met him last fall at the Whitehead Institute in Cambridge, Mass. “It is simply a consequence of increasing entropy, increasing disorder.” He is the co-author of The Hallmarks of Cancer, one of the most influential papers in the field. It describes in fascinating detail the multi-step process through which a single cell becomes malignant. (It is available as a pdf.)

I first came across Dr. Weinberg in a book by my colleague Natalie Angier, Natural Obsessions: Striving to Unlock the Deepest Secrets of the Cancer Cell. I read it when it was published in 1988, shortly after I had taken a job at the Times. The office where I worked (the Week in Review) was directly across the hall from the Book Review, and one of the editors there asked me to do a brief telephone interview with Natalie, who was teaching at the NYU Graduate School of Journalism. It wasn’t necessarily expected that I read her whole book,  but once I started I was hooked.

More recently I have been reading Dr. Weinberg’s own popular works: The Renegade Cell and Racing to the Beginning of the Road. He is a good, clear writer, a talent that also shows in his recent textbook, The Biology of Cancer.

In fact I have already acquired enough cancer books to fill a rolling library cart. I have two of these now and use them to create small pockets of order in an office that is otherwise buried in books. A folder on my computer (361 megabytes so far) is stuffed with notes, drafts, downloaded papers, et cetera — material for a book I am writing about the science of cancer. If all goes well it will be published in a couple of years by Knopf in the United States, Bodley Head in England, and whoever buys the foreign translation rights.

For almost two years after the publication of my last book, The Ten Most Beautiful Experiments, I tried to decide what to take on next. Most of what I have written — in books and in articles for the Times, Scientific American, Slate, and other publications — has been about the physical sciences, but I wanted to immerse myself in something entirely new. As I go along I’ll be spinning off more Times stories about the surprising things I am learning. So much of what I thought I knew about cancer is turning out to be wrong.

I am also toying with the idea of charting my progress with this journal. I have mixed feelings. A while ago in The Santa Fe Review, I wrote about my aversion to blogging  (please see My Anti-Blog). I was an early adopter of the Internet. Since the mid 1990s I have had my own Web site, coded entirely by hand, describing my books and providing biographical information and links to my newspaper and magazine stories. But that is more or less static with only an occasional update.  Again, maybe it is time to try something new.

George Johnson
talaya.net

Share